HL_6BY1_068

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUGAUAAAC

Length

9 nucleotides

Bulged bases

6BY1|1|BA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_068 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3766

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6BY1|1|BA|G|1164
6BY1|1|BA|U|1165
6BY1|1|BA|G|1166
6BY1|1|BA|A|1167
6BY1|1|BA|U|1168
6BY1|1|BA|A|1169
6BY1|1|BA|A|1170
6BY1|1|BA|A|1171
6BY1|1|BA|C|1172

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BG

30S ribosomal protein S7