HL_6BY1_156

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_156 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2418

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6BY1|1|DA|U|158
6BY1|1|DA|G|159
6BY1|1|DA|A|160
6BY1|1|DA|A|161
6BY1|1|DA|U|162
6BY1|1|DA|C|163
6BY1|1|DA|C|164
6BY1|1|DA|A|165
6BY1|1|DA|U|166
6BY1|1|DA|A|167
6BY1|1|DA|G|168

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L28