HL_6BY1_180

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6BY1|1|DA|U|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_180 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.3291

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6BY1|1|DA|C|1092
6BY1|1|DA|G|1093
6BY1|1|DA|U|1094
6BY1|1|DA|A|1095
6BY1|1|DA|A|1096
6BY1|1|DA|U|1097
6BY1|1|DA|A|1098
6BY1|1|DA|G|1099

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6