HL_6CB1_012
3D structure
- PDB id
- 6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CCUUGUG
- Length
- 7 nucleotides
- Bulged bases
- 6CB1|1|1|U|464, 6CB1|1|1|U|467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6CB1_012 not in the Motif Atlas
- Geometric match to HL_6VMY_004
- Geometric discrepancy: 0.2443
- The information below is about HL_6VMY_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6CB1|1|1|C|462
6CB1|1|1|C|463
6CB1|1|1|U|464
6CB1|1|1|U|465
6CB1|1|1|G|466
6CB1|1|1|U|467
6CB1|1|1|G|468
Current chains
- Chain 1
- 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain D
- Protein MAK16
- Chain F
- 60S ribosomal protein L7-A
- Chain z
- Ribosomal RNA-processing protein 1
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