HL_6D90_025
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6D90|1|2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D90_025 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.1573
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6D90|1|2|G|1245
6D90|1|2|A|1246
6D90|1|2|C|1247
6D90|1|2|U|1248
6D90|1|2|C|1249
6D90|1|2|A|1250
6D90|1|2|A|1251
6D90|1|2|C|1252
6D90|1|2|A|1253
6D90|1|2|C|1254
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain RR
- uS9
- Chain VV
- uS10
- Chain ee
- eS29
- Chain jj
- eRF1
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