HL_6D90_042

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

6D90|1|4|C|6146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_042 not in the Motif Atlas

Homologous match to HL_2IL9_003

Geometric discrepancy: 0.5896

The information below is about HL_2IL9_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6D90|1|4|G|6141
6D90|1|4|C|6142
6D90|1|4|A|6143
6D90|1|4|G|6144
6D90|1|4|C|6145
6D90|1|4|C|6146
6D90|1|4|C|6147

Current chains

Chain 4

CrPV-IRES

Nearby chains