HL_6D90_155

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUAGGUAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_155 not in the Motif Atlas

Geometric match to HL_3B31_001

Geometric discrepancy: 0.1179

The information below is about HL_3B31_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92697.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6D90|1|4|A|6184
6D90|1|4|U|6185
6D90|1|4|U|6186
6D90|1|4|A|6187
6D90|1|4|G|6188
6D90|1|4|G|6189
6D90|1|4|U|6190
6D90|1|4|A|6191
6D90|1|4|G|6192
6D90|1|4|U|6193

Current chains

Chain 4

CrPV-IRES

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA