HL_6D9J_026

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6D9J|1|2|U|1300, 6D9J|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_026 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.5738

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6D9J|1|2|A|1295
6D9J|1|2|U|1296
6D9J|1|2|U|1297
6D9J|1|2|G|1298
6D9J|1|2|A|1299
6D9J|1|2|U|1300
6D9J|1|2|A|1301
6D9J|1|2|G|1302
6D9J|1|2|C|1303
6D9J|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain QQ

uS19

Chain ee

eS29

Chain gg

eS31