HL_6D9J_065

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

6D9J|1|5|U|1596, 6D9J|1|5|A|1600, 6D9J|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_065 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1358

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6D9J|1|5|A|1593
6D9J|1|5|C|1594
6D9J|1|5|G|1595
6D9J|1|5|U|1596
6D9J|1|5|G|1597
6D9J|1|5|C|1598
6D9J|1|5|G|1599
6D9J|1|5|A|1600
6D9J|1|5|A|1601
6D9J|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

eL37