HL_6D9J_073
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_073 not in the Motif Atlas
- Homologous match to HL_8C3A_028
- Geometric discrepancy: 0.3262
- The information below is about HL_8C3A_028
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6D9J|1|5|U|2006
6D9J|1|5|G|2007
6D9J|1|5|U|2008
6D9J|1|5|A|2009
6D9J|1|5|A|2010
6D9J|1|5|C|2011
6D9J|1|5|A|2012
6D9J|1|5|A|2013
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- eEF2
- Chain m
- eL40
- Chain s
- uL10
- Chain t
- uL11
Coloring options: