HL_6D9J_086

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

6D9J|1|5|C|2794, 6D9J|1|5|G|2796, 6D9J|1|5|A|2798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_086 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.1942

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6D9J|1|5|C|2792
6D9J|1|5|G|2793
6D9J|1|5|C|2794
6D9J|1|5|A|2795
6D9J|1|5|G|2796
6D9J|1|5|C|2797
6D9J|1|5|A|2798
6D9J|1|5|G|2799

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain j

eL37

Chain l

eL39