HL_6D9J_094

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6D9J|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_094 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.2063

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6D9J|1|5|U|3796
6D9J|1|5|C|3797
6D9J|1|5|U|3798
6D9J|1|5|A|3799
6D9J|1|5|A|3800
6D9J|1|5|U|3801
6D9J|1|5|U|3802
6D9J|1|5|A|3803
6D9J|1|5|G|3804

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain V

uL14