HL_6DNC_042
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACACGUGGUAU
- Length
- 11 nucleotides
- Bulged bases
- 6DNC|1|B|G|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_042 not in the Motif Atlas
- Homologous match to HL_5J7L_145
- Geometric discrepancy: 0.2309
- The information below is about HL_5J7L_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6DNC|1|B|A|382
6DNC|1|B|C|383
6DNC|1|B|A|384
6DNC|1|B|C|385
6DNC|1|B|G|386
6DNC|1|B|U|387
6DNC|1|B|G|388
6DNC|1|B|G|389
6DNC|1|B|U|390
6DNC|1|B|A|391
6DNC|1|B|U|392
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain BA
- 50S ribosomal protein L28
Coloring options: