HL_6DTI_006
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 6DTI|1|A|G|262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DTI_006 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.0844
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
6DTI|1|A|G|255
6DTI|1|A|G|256
6DTI|1|A|U|257
6DTI|1|A|A|258
6DTI|1|A|A|259
6DTI|1|A|U|260
6DTI|1|A|G|261
6DTI|1|A|G|262
6DTI|1|A|C|263
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain Q
- 30S ribosomal protein S17
- Chain T
- 30S ribosomal protein S20
Coloring options: