HL_6EK0_007
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGUGAG(B9B)C
- Length
- 9 nucleotides
- Bulged bases
- 6EK0|1|L5|G|232, 6EK0|1|L5|G|236
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EK0_007 not in the Motif Atlas
- Homologous match to HL_8CRE_007
- Geometric discrepancy: 0.443
- The information below is about HL_8CRE_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
6EK0|1|L5|G|230
6EK0|1|L5|U|231
6EK0|1|L5|G|232
6EK0|1|L5|U|233
6EK0|1|L5|G|234
6EK0|1|L5|A|235
6EK0|1|L5|G|236
6EK0|1|L5|B9B|237
6EK0|1|L5|C|238
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
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