HL_6EK0_024

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6EK0|1|L5|U|1596, 6EK0|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0797

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6EK0|1|L5|A|1593
6EK0|1|L5|C|1594
6EK0|1|L5|G|1595
6EK0|1|L5|U|1596
6EK0|1|L5|G|1597
6EK0|1|L5|C|1598
6EK0|1|L5|A|1599
6EK0|1|L5|A|1600
6EK0|1|L5|A|1601
6EK0|1|L5|U|1602

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37