HL_6EK0_053

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAC(B8H)A(PSU)GAC

Length

11 nucleotides

Bulged bases

6EK0|1|L5|A|3760, 6EK0|1|L5|C|3761, 6EK0|1|L5|A|3763

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_053 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3193

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6EK0|1|L5|G|3757
6EK0|1|L5|U|3758
6EK0|1|L5|A|3759
6EK0|1|L5|A|3760
6EK0|1|L5|C|3761
6EK0|1|L5|B8H|3762
6EK0|1|L5|A|3763
6EK0|1|L5|PSU|3764
6EK0|1|L5|G|3765
6EK0|1|L5|A|3766
6EK0|1|L5|C|3767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA