HL_6ELZ_061

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

6ELZ|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_061 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3945

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6ELZ|1|1|C|1238
6ELZ|1|1|C|1239
6ELZ|1|1|A|1240
6ELZ|1|1|U|1241
6ELZ|1|1|G|1242
6ELZ|1|1|G|1243
6ELZ|1|1|A|1244
6ELZ|1|1|A|1245
6ELZ|1|1|G|1246
6ELZ|1|1|U|1247
6ELZ|1|1|C|1248
6ELZ|1|1|G|1249
6ELZ|1|1|G|1250

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1