3D structure

PDB id
6ENF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
6ENF|1|a|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ENF_094 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.1513
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_63894.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
18

Unit IDs

6ENF|1|a|G|1089
6ENF|1|a|U|1090
6ENF|1|a|U|1091
6ENF|1|a|A|1092
6ENF|1|a|A|1093
6ENF|1|a|G|1094
6ENF|1|a|U|1095
6ENF|1|a|C|1096

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain g
30S ribosomal protein S7
Chain u
30S ribosomal protein S21

Coloring options:


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