HL_6ERI_005

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAUCCAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2728

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ERI|1|AA|U|142
6ERI|1|AA|G|143
6ERI|1|AA|A|144
6ERI|1|AA|A|145
6ERI|1|AA|U|146
6ERI|1|AA|C|147
6ERI|1|AA|C|148
6ERI|1|AA|A|149
6ERI|1|AA|U|150
6ERI|1|AA|G|151
6ERI|1|AA|G|152

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L28, chloroplastic