HL_6ERI_043

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6ERI|1|AA|A|1670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_043 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1226

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ERI|1|AA|A|1666
6ERI|1|AA|G|1667
6ERI|1|AA|A|1668
6ERI|1|AA|G|1669
6ERI|1|AA|A|1670
6ERI|1|AA|A|1671
6ERI|1|AA|U|1672

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic