HL_6ERI_047

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6ERI|1|AA|A|1790, 6ERI|1|AA|C|1791, 6ERI|1|AA|C|1792, 6ERI|1|AA|A|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_047 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1308

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6ERI|1|AA|U|1787
6ERI|1|AA|U|1788
6ERI|1|AA|U|1789
6ERI|1|AA|A|1790
6ERI|1|AA|C|1791
6ERI|1|AA|C|1792
6ERI|1|AA|A|1793
6ERI|1|AA|A|1794
6ERI|1|AA|A|1795
6ERI|1|AA|A|1796
6ERI|1|AA|A|1797

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic