HL_6ERI_068

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6ERI|1|AA|G|2769, 6ERI|1|AA|A|2775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_068 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.3845

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6ERI|1|AA|C|2763
6ERI|1|AA|U|2764
6ERI|1|AA|G|2765
6ERI|1|AA|A|2766
6ERI|1|AA|A|2767
6ERI|1|AA|A|2768
6ERI|1|AA|G|2769
6ERI|1|AA|C|2770
6ERI|1|AA|A|2771
6ERI|1|AA|U|2772
6ERI|1|AA|C|2773
6ERI|1|AA|U|2774
6ERI|1|AA|A|2775
6ERI|1|AA|A|2776
6ERI|1|AA|G|2777

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L6, chloroplastic

Chain AJ

50S ribosomal protein L13, chloroplastic

Chain Ae

50S ribosomal protein L36, chloroplastic