HL_6FEC_006

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6FEC|1|A|U|285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2468

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6FEC|1|A|G|279
6FEC|1|A|G|280
6FEC|1|A|U|281
6FEC|1|A|G|282
6FEC|1|A|A|283
6FEC|1|A|C|284
6FEC|1|A|U|285
6FEC|1|A|C|286

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S11

Chain I

40S ribosomal protein S4, X isoform

Chain q

40S ribosomal protein S6