HL_6FEC_024
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UUAUUCCCAUGA
- Length
- 12 nucleotides
- Bulged bases
- 6FEC|1|A|C|1112
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FEC_024 not in the Motif Atlas
- Homologous match to HL_8C3A_214
- Geometric discrepancy: 0.5488
- The information below is about HL_8C3A_214
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_66226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6FEC|1|A|U|1107
6FEC|1|A|U|1108
6FEC|1|A|A|1109
6FEC|1|A|U|1110
6FEC|1|A|U|1111
6FEC|1|A|C|1112
6FEC|1|A|C|1113
6FEC|1|A|C|1114
6FEC|1|A|A|1115
6FEC|1|A|U|1116
6FEC|1|A|G|1117
6FEC|1|A|A|1118
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Eukaryotic translation initiation factor 3 subunit A
- Chain 2
- Eukaryotic translation initiation factor 3 subunit C
- Chain Y
- 40S ribosomal protein S27
- Chain e
- 40S ribosomal protein S17
- Chain i
- 40S ribosomal protein S3a
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