HL_6FEC_028

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6FEC|1|A|U|1296

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3717

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6FEC|1|A|A|1291
6FEC|1|A|U|1292
6FEC|1|A|U|1293
6FEC|1|A|G|1294
6FEC|1|A|A|1295
6FEC|1|A|U|1296
6FEC|1|A|A|1297
6FEC|1|A|G|1298
6FEC|1|A|C|1299
6FEC|1|A|U|1300

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S29

Chain n

40S ribosomal protein S15

Chain p

Ubiquitin-40S ribosomal protein S27a