HL_6FEC_046
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6FEC|1|A|U|1057
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FEC_046 not in the Motif Atlas
- Homologous match to HL_8CRE_212
- Geometric discrepancy: 0.3288
- The information below is about HL_8CRE_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6FEC|1|A|G|1050
6FEC|1|A|A|1051
6FEC|1|A|U|1052
6FEC|1|A|C|1053
6FEC|1|A|A|1054
6FEC|1|A|G|1055
6FEC|1|A|A|1056
6FEC|1|A|U|1057
6FEC|1|A|A|1058
6FEC|1|A|C|1059
6FEC|1|A|C|1060
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- Messenger RNA (26-MER)
- Chain N
- Transfer RNA; tRNA
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
- Chain j
- 40S ribosomal protein S14
- Chain k
- 40S ribosomal protein S26
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