HL_6FRK_035

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6FRK|1|5|A|1983, 6FRK|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_035 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4471

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6FRK|1|5|C|1978
6FRK|1|5|A|1979
6FRK|1|5|U|1980
6FRK|1|5|G|1981
6FRK|1|5|G|1982
6FRK|1|5|A|1983
6FRK|1|5|A|1984
6FRK|1|5|G|1985
6FRK|1|5|U|1986
6FRK|1|5|C|1987
6FRK|1|5|G|1988

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 4

Ribosomal protein L12