HL_6FTG_021

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6FTG|1|u|U|1596, 6FTG|1|u|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_021 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.092

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|A|1593
6FTG|1|u|C|1594
6FTG|1|u|G|1595
6FTG|1|u|U|1596
6FTG|1|u|G|1597
6FTG|1|u|C|1598
6FTG|1|u|A|1599
6FTG|1|u|A|1600
6FTG|1|u|A|1601
6FTG|1|u|U|1602

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

Ribosomal protein L37