HL_6FTG_051

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6FTG|1|u|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_051 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1009

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6FTG|1|u|U|3796
6FTG|1|u|C|3797
6FTG|1|u|U|3798
6FTG|1|u|A|3799
6FTG|1|u|A|3800
6FTG|1|u|U|3801
6FTG|1|u|U|3802
6FTG|1|u|A|3803
6FTG|1|u|G|3804

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain V

uL14