HL_6FXC_043

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUUAUCAAAAAC

Length

13 nucleotides

Bulged bases

6FXC|1|AA|A|1807, 6FXC|1|AA|U|1808, 6FXC|1|AA|C|1809, 6FXC|1|AA|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_043 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.149

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6FXC|1|AA|G|1803
6FXC|1|AA|U|1804
6FXC|1|AA|U|1805
6FXC|1|AA|U|1806
6FXC|1|AA|A|1807
6FXC|1|AA|U|1808
6FXC|1|AA|C|1809
6FXC|1|AA|A|1810
6FXC|1|AA|A|1811
6FXC|1|AA|A|1812
6FXC|1|AA|A|1813
6FXC|1|AA|A|1814
6FXC|1|AA|C|1815

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AC

50S ribosomal protein L2