HL_6FXC_081

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_081 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3483

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6FXC|1|Aa|A|470
6FXC|1|Aa|A|471
6FXC|1|Aa|G|472
6FXC|1|Aa|U|473
6FXC|1|Aa|A|474
6FXC|1|Aa|A|475
6FXC|1|Aa|C|476
6FXC|1|Aa|U|477
6FXC|1|Aa|G|478
6FXC|1|Aa|U|479

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16