HL_6FXC_086

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6FXC|1|Aa|U|801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_086 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.4177

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6FXC|1|Aa|G|794
6FXC|1|Aa|A|795
6FXC|1|Aa|U|796
6FXC|1|Aa|U|797
6FXC|1|Aa|A|798
6FXC|1|Aa|G|799
6FXC|1|Aa|A|800
6FXC|1|Aa|U|801
6FXC|1|Aa|A|802
6FXC|1|Aa|C|803
6FXC|1|Aa|C|804

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ak

30S ribosomal protein S11

Chain Av

Ribosome hibernation promotion factor