HL_6FXC_213

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

6FXC|1|BA|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_213 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2516

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6FXC|1|BA|G|428
6FXC|1|BA|C|429
6FXC|1|BA|A|430
6FXC|1|BA|C|431
6FXC|1|BA|G|432
6FXC|1|BA|U|433
6FXC|1|BA|G|434
6FXC|1|BA|A|435
6FXC|1|BA|A|436
6FXC|1|BA|A|437
6FXC|1|BA|U|438

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L28