HL_6GB2_011

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUGGCAAAA

Length

10 nucleotides

Bulged bases

6GB2|1|BA|G|294, 6GB2|1|BA|A|298, 6GB2|1|BA|A|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_011 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1015

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

6GB2|1|BA|U|291
6GB2|1|BA|G|292
6GB2|1|BA|U|293
6GB2|1|BA|G|294
6GB2|1|BA|G|295
6GB2|1|BA|C|296
6GB2|1|BA|A|297
6GB2|1|BA|A|298
6GB2|1|BA|A|299
6GB2|1|BA|A|300

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BE

ICT1

Chain BW

Mitochondrial ribosomal protein L22

Chain Bi

Mitochondrial ribosomal protein L45