HL_6GB2_024
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6GB2|1|BA|A|832, 6GB2|1|BA|C|833, 6GB2|1|BA|C|834, 6GB2|1|BA|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GB2_024 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0725
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6GB2|1|BA|U|829
6GB2|1|BA|U|830
6GB2|1|BA|U|831
6GB2|1|BA|A|832
6GB2|1|BA|C|833
6GB2|1|BA|C|834
6GB2|1|BA|A|835
6GB2|1|BA|A|836
6GB2|1|BA|A|837
6GB2|1|BA|A|838
6GB2|1|BA|A|839
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BD
- Mitochondrial ribosomal protein L2
- Chain BW
- Mitochondrial ribosomal protein L22
- Chain Bi
- Mitochondrial ribosomal protein L45
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