HL_6GC0_029

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAGCGUAAUAGCUC

Length

16 nucleotides

Bulged bases

6GC0|1|A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_029 not in the Motif Atlas

Homologous match to HL_5J7L_162

Geometric discrepancy: 0.428

The information below is about HL_5J7L_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04775.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GC0|1|A|G|1087
6GC0|1|A|A|1088
6GC0|1|A|A|1089
6GC0|1|A|A|1090
6GC0|1|A|G|1091
6GC0|1|A|C|1092
6GC0|1|A|G|1093
6GC0|1|A|U|1094
6GC0|1|A|A|1095
6GC0|1|A|A|1096
6GC0|1|A|U|1097
6GC0|1|A|A|1098
6GC0|1|A|G|1099
6GC0|1|A|C|1100
6GC0|1|A|U|1101
6GC0|1|A|C|1102

Current chains

Chain A

23S ribosomal RNA

Nearby chains