HL_6GC0_045
3D structure
- PDB id
- 6GC0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit assembly intermediate state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUUAUUAAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 6GC0|1|A|A|1780, 6GC0|1|A|U|1781, 6GC0|1|A|U|1782, 6GC0|1|A|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GC0_045 not in the Motif Atlas
- Homologous match to HL_7A0S_045
- Geometric discrepancy: 0.238
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GC0|1|A|G|1776
6GC0|1|A|U|1777
6GC0|1|A|U|1778
6GC0|1|A|U|1779
6GC0|1|A|A|1780
6GC0|1|A|U|1781
6GC0|1|A|U|1782
6GC0|1|A|A|1783
6GC0|1|A|A|1784
6GC0|1|A|A|1785
6GC0|1|A|A|1786
6GC0|1|A|A|1787
6GC0|1|A|C|1788
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
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