HL_6GQB_091

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3419

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GQB|1|2|A|829
6GQB|1|2|U|830
6GQB|1|2|U|831
6GQB|1|2|U|832
6GQB|1|2|U|833
6GQB|1|2|G|834
6GQB|1|2|U|835
6GQB|1|2|U|836
6GQB|1|2|G|837
6GQB|1|2|G|838
6GQB|1|2|U|839
6GQB|1|2|U|840
6GQB|1|2|U|841
6GQB|1|2|C|842
6GQB|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A