HL_6GQB_098
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6GQB|1|2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_098 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.3217
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GQB|1|2|G|1188
6GQB|1|2|A|1189
6GQB|1|2|C|1190
6GQB|1|2|U|1191
6GQB|1|2|C|1192
6GQB|1|2|A|1193
6GQB|1|2|A|1194
6GQB|1|2|C|1195
6GQB|1|2|A|1196
6GQB|1|2|C|1197
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AK
- 40S ribosomal protein S20
- Chain AT
- 40S ribosomal protein S29-A
- Chain AX
- Transfer RNA; tRNA
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