HL_6GXM_113

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6GXM|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_113 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.211

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXM|1|A|A|382
6GXM|1|A|C|383
6GXM|1|A|A|384
6GXM|1|A|C|385
6GXM|1|A|G|386
6GXM|1|A|U|387
6GXM|1|A|G|388
6GXM|1|A|G|389
6GXM|1|A|U|390
6GXM|1|A|A|391
6GXM|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28