HL_6GZ4_026

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

6GZ4|1|A2|G|1803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_026 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.4494

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6GZ4|1|A2|C|1798
6GZ4|1|A2|U|1799
6GZ4|1|A2|G|1800
6GZ4|1|A2|G|1801
6GZ4|1|A2|C|1802
6GZ4|1|A2|G|1803
6GZ4|1|A2|U|1804
6GZ4|1|A2|G|1805

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

ribosomal protein uL18

Chain AT

ribosomal protein eL21

Chain Ab

ribosomal protein eL29