HL_6GZ4_098

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6GZ4|1|B1|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_098 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4045

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GZ4|1|B1|U|885
6GZ4|1|B1|A|886
6GZ4|1|B1|U|887
6GZ4|1|B1|U|888
6GZ4|1|B1|U|889
6GZ4|1|B1|U|890
6GZ4|1|B1|G|891
6GZ4|1|B1|U|892
6GZ4|1|B1|U|893
6GZ4|1|B1|G|894
6GZ4|1|B1|G|895
6GZ4|1|B1|U|896
6GZ4|1|B1|U|897
6GZ4|1|B1|U|898
6GZ4|1|B1|U|899
6GZ4|1|B1|C|900
6GZ4|1|B1|G|901

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

ribosomal protein eS8

Chain BL

ribosomal protein uS17