HL_6GZ4_106

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6GZ4|1|B1|U|1300, 6GZ4|1|B1|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_106 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3783

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6GZ4|1|B1|A|1295
6GZ4|1|B1|U|1296
6GZ4|1|B1|U|1297
6GZ4|1|B1|G|1298
6GZ4|1|B1|A|1299
6GZ4|1|B1|U|1300
6GZ4|1|B1|A|1301
6GZ4|1|B1|G|1302
6GZ4|1|B1|C|1303
6GZ4|1|B1|U|1304

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BP

ribosomal protein uS19

Chain Bd

ribosomal protein uS14

Chain Bf

ribosomal protein eS31