HL_6GZX_061

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GZX|1|A1|G|2766, 6GZX|1|A1|C|2770

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_061 not in the Motif Atlas

Geometric match to HL_7RQB_066

Geometric discrepancy: 0.3236

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6GZX|1|A1|C|2760
6GZX|1|A1|U|2761
6GZX|1|A1|G|2762
6GZX|1|A1|A|2763
6GZX|1|A1|A|2764
6GZX|1|A1|A|2765
6GZX|1|A1|G|2766
6GZX|1|A1|C|2767
6GZX|1|A1|A|2768
6GZX|1|A1|U|2769
6GZX|1|A1|C|2770
6GZX|1|A1|U|2771
6GZX|1|A1|A|2772
6GZX|1|A1|A|2773
6GZX|1|A1|G|2774

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain G1

50S ribosomal protein L6

Chain I1

50S ribosomal protein L13

Chain e1

50S ribosomal protein L36