HL_6GZX_146

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_146 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.4773

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6GZX|1|A3|C|672
6GZX|1|A3|G|673
6GZX|1|A3|G|674
6GZX|1|A3|U|675
6GZX|1|A3|G|676
6GZX|1|A3|A|677
6GZX|1|A3|A|678
6GZX|1|A3|A|679
6GZX|1|A3|U|680
6GZX|1|A3|G|681

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain G3

30S ribosomal protein S7

Chain K3

30S ribosomal protein S11

Chain V3

Ribosome hibernation promoting factor