HL_6GZZ_225

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6GZZ|1|A3|G|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_225 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.3252

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6GZZ|1|A3|G|1071
6GZZ|1|A3|U|1072
6GZZ|1|A3|U|1073
6GZZ|1|A3|A|1074
6GZZ|1|A3|A|1075
6GZZ|1|A3|G|1076
6GZZ|1|A3|U|1077
6GZZ|1|A3|C|1078

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain B3

30S ribosomal protein S2

Chain G3

30S ribosomal protein S7