HL_6H58_079

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6H58|1|AA|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_079 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.1343

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6H58|1|AA|A|382
6H58|1|AA|C|383
6H58|1|AA|A|384
6H58|1|AA|C|385
6H58|1|AA|G|386
6H58|1|AA|U|387
6H58|1|AA|G|388
6H58|1|AA|G|389
6H58|1|AA|U|390
6H58|1|AA|A|391
6H58|1|AA|U|392

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain XX

50S ribosomal protein L28

Chain ww

Transfer RNA; tRNA