3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
6H58|1|a|U|1364
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6H58_169 not in the Motif Atlas
Geometric match to HL_5J7L_029
Geometric discrepancy: 0.1229
The information below is about HL_5J7L_029
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6H58|1|a|G|1356
6H58|1|a|A|1357
6H58|1|a|U|1358
6H58|1|a|C|1359
6H58|1|a|A|1360
6H58|1|a|G|1361
6H58|1|a|A|1362
6H58|1|a|A|1363
6H58|1|a|U|1364
6H58|1|a|G|1365
6H58|1|a|C|1366

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1021 s