3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
6H58|1|aa|U|793
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6H58_188 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0913
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6H58|1|aa|G|786
6H58|1|aa|A|787
6H58|1|aa|U|788
6H58|1|aa|U|789
6H58|1|aa|A|790
6H58|1|aa|G|791
6H58|1|aa|A|792
6H58|1|aa|U|793
6H58|1|aa|A|794
6H58|1|aa|C|795
6H58|1|aa|C|796

Current chains

Chain aa
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain kk
30S ribosomal protein S11
Chain uu
30S ribosomal protein S21
Chain ww
Transfer RNA; tRNA
Chain xx
Ribosome hibernation promoting factor

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